Ashutosh Malhotra , Erfan Younesi, Sudeep Sahadevan, Joerg zimmermann and Martin-Hofmann-Apitius." Exploring novel mechanistic insights in Alzheimer’s disease by assessing reliability of protein interactions" Nature Scientific reports 5 (2015).
Ashutosh Malhotra, Erfan Younesi, Shweta Bagewadi and Martin Hofmann-Apitius "Linking hypothetical knowledge patterns to disease molecular signatures for biomarker discovery in Alzheimer’s disease." Genome medicine 6.11 (2014): 97.
Ashutosh Malhotra, Erfan Younesi, Michaela Guendel, Bernd Mueller, Michael T.Heneka and Martin Hofmann-Apitius (2014). ADO: A disease ontology representing the domain knowledge specific to Alzheimer's disease. Alzheimer's and Dementia10.2 238-246.
Allen Genevera, Ashutosh Malhotra, Paurush Praveen Sinha et.al. Crowdsourcing estimation of cognitive decline and resilence in Alzheimer's disease. Alzheimer's and Dementia 2016, Pages 645-653.
Ashutosh Malhotra, Martin Hofmann-Apitius, Pablo Villoslada. Knowledge retrieval from PubMed abstracts and Electronic medical records with Multiple sclerosis ontology.PLoS ONE. DOI.10.1371/journal.pone.0116718.
Ashutosh Malhotra, Erfan Younesi, Harsha Gurulingappa, Martin Hofmann-Apitius (2013) ‘HypothesisFinder:’ A Strategy for the Detection of Speculative Statements in Scientific Text. PLoS Comput Biol 9(7): e1003117. doi:10.1371/journal.pcbi.1003117
Michaela Gündel, Erfan Younesi, Ashutosh Malhotra, Jiali Wang, Bijun Zhang and Martin Hofmann-Apitius, (2013). HuPSON: the human physiology simulation ontology. Journal of biomedical semantics, 4(1), 35.
Erfan Younesi, Ashutosh Malhotra, Michaela Gündel... and Martin Hofmann-Apitius. PDON: Parkinson’s disease ontology for representation and modeling of the Parkinson’s disease knowledge domain. Theoretical Biology and Medical Modelling, 12(1), 20.(2015)
Ashutosh Malhotra and Martin Hofmann-Apitius. Exploring novelty in mechanistic models for Alzheimer's disease by assessing reliability of protein interactions. European conference on computational biology (ECCB) Strassbourg France (2014).
Malhotra, A., Gündel, M. & Hofmann-Apitius, M. (2012). ADO: A formal ontology for understanding structure of information and domain knowledge of Alzheimer's disease.. In R. Cornet & R. Stevens (eds.), ICBO, : CEUR-WS.org.
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Pradeep K. Naik, Md. Afroz Alam, Ashutosh Malhotra and Owasis Rizvi (2010). Molecular Modeling and Structure-activity relationship of the podophyllotoxin and its congeners. Journal of Biomolecular Screening, 15(5): 528-540.
